Pathway pharmacology · Open data

PathoRx

A study tool for seeing where drugs act on disease pathways. Pick a disease, a drug or a gene, and PathoRx draws the published KEGG or Reactome map with each drug's recorded targets marked on it, what papers say happens next, and what the diagram predicts further along. Every mark says which of those it is.

Open PathoRx ↗Try: insulin on the diabetes map ↗

Opens pathorx.com in a new tab. Not medical advice — a study aid built from public databases.

PathoRx showing the KEGG type 2 diabetes map with insulin glargine applied: the INSR box is tagged, IRS1 and PI3K are highlighted, and the rest of the map is faded.
Insulin glargine on the type 2 diabetes map: it binds INSR (tagged), papers record INSR switching on IRS1 (teal dashes), and everything it does not touch fades back.

What you can do

Understand a disease

Open the published pathway map and see which genes are involved and which drugs act on them.

Type 2 diabetes map ↗

See how a drug works

Apply a drug: its targets are tagged on the map, and everything it does not touch fades back.

Afatinib on EGFR signalling ↗

Look up a gene

Search any gene for its interaction partners, the pathways it sits in, drugs against it and linked diseases.

Search PathoRx ↗

Every mark says what kind of claim it is

A colour on a pathway map can mean a measurement, a citation or a guess. PathoRx keeps those three apart and labels each one where it appears.

Recorded

What a database recorded: the drug's targets and action from ChEMBL, and one-step statements from SIGNOR, each with its PubMed citation, species and the quoted sentence.

Predicted

What the drawn diagram implies further along — signs multiplied along its arrows. Always labelled as inferred, never mixed with the cited layer.

Measured

Expression changes measured in cell lines (LINCS L1000), shown in words beside the map and never on the prediction's colour scale.

PathoRx home page: an interaction graph of well-studied genes with a start card offering three tasks.
Start from a disease, a drug or a gene.
PathoRx showing lapatinib applied to a Reactome ERBB2 diagram, with a three-step card: binds, next step from papers, predicted further along.
Lapatinib on ERBB2 signalling: one protein drawn in 35 forms is tagged once and counted.

Built on public data

  • KEGG — pathway maps and relations
  • Reactome — pathway diagrams, complexes and reactions
  • WikiPathways — community pathways
  • ChEMBL — drug targets and mechanism of action
  • SIGNOR — cited causal statements
  • LINCS L1000 — measured expression changes
  • STRING · BioGRID · Pathway Commons — interaction networks
  • DisGeNET · OMIM · MONDO — gene–disease links and disease terms
  • SIDER — side effects